Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARD-GRALDRMLLGAVVENNDKKRFALSADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGS--------RHHVHLSARRATALEVGRRYGSPVLLEIDARDMHLAGHLFHQAENGVWLTERVPVRFIREA |
3HKV Chain:A ((16-120)) | -------------------------LAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRE--RLLQRCE-----------RRPVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 254 for 468 contacts (0.5/contact) +
2D Compatibility (PS) -10237 + (NN) -1328 + (LL) 2820
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -13591.0 ( -29.04 by residue)
QMean score : -0.048
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