Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKP-----------GYRCAPINLGANTDPYQPLERERRLTRQVLEVLLR-FR-----HPLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPR--AAAPSARLRAIRTLSGN----GIPVGVLCSPMIPMVND--MELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF |
| 3RFA Chain:A ((114-305)) | -------------------------------------------------------------RATLCVSSQVGCALECKFCSTAQQGFNR----NLRV-----------SEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNN----VVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL--DKLGDM---IDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYV-MLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGD------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -66718 for 1245 contacts (-53.6/contact) +
2D Compatibility (PS) -18577 + (NN) -14509 + (LL) 8560
1D Compatibility (HY) -7200 + (ID) 1650
Total energy: -100094.0 ( -80.40 by residue)
QMean score : 0.408
|
|
|