Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MAGEAG------QPSEP-----LNLLAGMAAAPWDYDFFQALRRIECESPQLPRLG-HSVRLA-------DDPLRL--------GQKPDCTFAP--STLASVSQAGTAAVPRL----------DQFFFGLTGPNG-PLPLHLTEYARERQRNVNDATFKRFMDVFHHRLLTLFYRAWAEARPEISHDRIDDDYWSARLAALSGRGMPSLRGREPLADTAR----YYYTGHLAAQTRYPDGLRVILAEYFEVPVAVEEYVGQWLELPERSRLGVDSTSLGMDVCLGTHV-WDRQHKFRLRLGPLDLDQYQRFLPDGDHFVELAAWVAEYLGEELDWDVNLVLQRHEVPPLG------LQGGGRLGFNT------WLGDPGQDARD----------LLLARQYATARPHEHKEKEHE |
| 4LYP Chain:A ((34-449)) | SEFAFVKIASDGKGFTRYGEPYLIRGANYWQGMNLGADDCSGGD-RKRMELEIKQMAEMGINNLRVMASSEGPDDQPYRMRPSMMPQPGKYNEGVFVGLDYLLDTMDRYNMTAVMTLGNFWQWSGGFGQYVAWITGNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQNRRNTVNGKIYKEDPVIMSWQIANEPQEAPASWFEEISTFIKKGAPKHLVSAGLESKLDEYDFDRAHDHKNIDY-TTCHCWVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNKPIVMEEFGMARDAWRNPEDETYKYLPSTPTSHKDEYYQKAFNQIVSLASNRSFSGSNFWAYGGEGRSTYPPNPYGMVWLGDPPHEPHGWYSVYSNDTTVQIIKDYNANLLKVQKELSK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42402 for 2631 contacts (-16.1/contact) +
2D Compatibility (PS) -35973 + (NN) -7725 + (LL) 108
1D Compatibility (HY) -5200 + (ID) 2950
Total energy: -94142.0 ( -35.78 by residue)
QMean score : 0.173
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