Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLYR--LHEADLEIPDAWQDQSIN--------IFKLPASGPAREASFVISRDASQGDAPFADY------VARQLENAEKQ---LPGFKLHKRWDINIHGHAAVLLDYQWQRE-GRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPRPTPS
2LNJ Chain:A ((33-187))
-QRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLI---ERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHVY----
General information:
TITO was launched using:
RESULT:
Template:
2LNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46498 for 880 contacts (-52.8/contact) +
2D Compatibility (PS) -14462 + (NN) -2788 + (LL) -260
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -66758.0 ( -75.86 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2LNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNJ-query.scw
PDB file :
Tito_Scwrl_2LNJ.pdb
: