Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKKLSPIFSNITGVVRYQDLAYVASVSDEIQEQNIAHSYVTEWDCGTWCVAGEDDDMLPWEIVSATVVHEPVEQALFLGARGQVFCMGSGDIHEEQLPDGDDAIGGRGNMRGVACI---DGVAYACGMDRQVYRRFD-ENDWRAIDTGARPPAGSEAVVGFEAIG--GFGAREIYAVGW------DGEIWQYD--GKRWQPRESPTN--------LILTAICCAE--DGSVYACGQAGTLLRGR--NDHWEIIAQDD----VDEDLWSLAWF---DGALYVSSA--TAVYTLVG--GHLKEVDFGDEQPQRCFHLSAADGVLWSIAAKDIFSFDGQQWTRID |
| 1SQJ Chain:A ((14-208)) | -----------------------------------------------------------------------------------------------------------GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQ--DMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72328 for 1121 contacts (-64.5/contact) +
2D Compatibility (PS) -16906 + (NN) -2803 + (LL) 6756
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -90031.0 ( -80.31 by residue)
QMean score : 0.290
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