Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQHDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQGGNLDYNVAWILLTFLGVLGVHRMYMG----KWITGIIYLFTGGLFFLGVLYDFWTLNGQVSERNGPQRI
1KF6 Chain:D ((77-110))
-------------------------------------------------------------------------------------WCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI----------
General information:
TITO was launched using:
RESULT:
Template:
1KF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17921 for 143 contacts (-125.3/contact) +
2D Compatibility (PS) -2767 + (NN) 2310 + (LL) 6360
1D Compatibility (HY) -400 + (ID) 350
Total energy: -12768.0 ( -89.29 by residue)
QMean score : -0.021
(partial model without unconserved sides chains):
PDB file :
Tito_1KF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KF6-query.scw
PDB file :
Tito_Scwrl_1KF6.pdb
: