Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPFSERISRL----KSSLIREILAAAQRPEVMSFAGGLPAEPMLPKVQWEQMPASMG--------QYGMSEGEPALREAIAAE-ARALGVP-CEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDLVALRQRLER-------HKPAFAYLIPTFQNPSGVRYSEERRDAVAALLDEFGVTLIEDEPYRELVFDEGRATPLVSRLRKSSWIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVRRDAMQEALLEHFGEL--AEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPF--FAEPEQNLGRLRLNFSHVAPERLHEGLRRLAKVVRDAQAAEAA |
| 1VP4 Chain:A ((20-415)) | -----KISKIGQNMKSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPS---MRLSFCLPPDEKIVEGIKRLREVVLEYGKEKHL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200521 for 3206 contacts (-62.5/contact) +
2D Compatibility (PS) -40713 + (NN) -25185 + (LL) 380
1D Compatibility (HY) -34000 + (ID) 6300
Total energy: -306339.0 ( -95.55 by residue)
QMean score : 0.534
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