Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPFATIPATERNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKA
2GOY Chain:C ((28-249))
---------------------------FDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE------------------
General information:
TITO was launched using:
RESULT:
Template:
2GOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99101 for 1729 contacts (-57.3/contact) +
2D Compatibility (PS) -23677 + (NN) -10292 + (LL) 2344
1D Compatibility (HY) -31200 + (ID) 11100
Total energy: -173026.0 ( -100.07 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2GOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOY-query.scw
PDB file :
Tito_Scwrl_2GOY.pdb
: