Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
3C5M Chain:A ((62-112))
-------------------------------------------------------------------YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN---ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH
General information:
TITO was launched using:
RESULT:
Template:
3C5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20004 for 262 contacts (-76.4/contact) +
2D Compatibility (PS) -5287 + (NN) -3254 + (LL) 2828
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -30267.0 ( -115.52 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_3C5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C5M-query.scw
PDB file :
Tito_Scwrl_3C5M.pdb
: