Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLLIGLIRFYQYAISPLIGPRCRFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVPERQEQACACHRTAKPGK
1Y9J Chain:A ((108-145))
--------------------SYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14346 for 186 contacts (-77.1/contact) +
2D Compatibility (PS) -3982 + (NN) -495 + (LL) 2980
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -17693.0 ( -95.12 by residue)
QMean score : -0.080
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9J-query.scw
PDB file :
Tito_Scwrl_1Y9J.pdb
: