Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDP---QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKS---LPAEIHQVIERQYQGVLRHHDRVRALRDARA
2CHP Chain:A ((7-152))
--KTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTE-HASITD---GGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG---
General information:
TITO was launched using:
RESULT:
Template:
2CHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3035 for 1039 contacts (-2.9/contact) +
2D Compatibility (PS) -15305 + (NN) -8648 + (LL) 684
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -29604.0 ( -28.49 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_2CHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CHP-query.scw
PDB file :
Tito_Scwrl_2CHP.pdb
: