Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGD-------YPSGKEGDVLTVEFRVMGIPCLGLNGGPAF-RHSEAFSFQVATD-----DQAETDRLWNAIVD-NGGE----------ESACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFKG
3L20 Chain:A ((5-146))
--TALFPYIAFE-NSKEALAYYEEVFGATDVKR-LEVGEEQASHFGMTKEEAQEATMHAEFEVLGVKVLCSDSFGRADKINNGISLLIDYDVNNKEDADKVEAFYEQIKDHSSIEIELPFADQFWGGKMGVFTDKYGVRWMLHGQD-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3L20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36220 for 712 contacts (-50.9/contact) +
2D Compatibility (PS) -12630 + (NN) -9093 + (LL) 3756
1D Compatibility (HY) 1200 + (ID) 700
Total energy: -53687.0 ( -75.40 by residue)
QMean score : 0.121
(partial model without unconserved sides chains):
PDB file :
Tito_3L20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L20-query.scw
PDB file :
Tito_Scwrl_3L20.pdb
: