Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQ--GRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK
1FDR Chain:A ((2-225))
-ADWVTGKVTKVQNWTDALFSL-TVHAPVLPFTAGQFTKLGLEI---RVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQEL--EKRYEG-----KLRIQTVVSRETAAGSLTGRIPALIESGELESTIGL-PMNKETSHVMLCGNPQMVRDTQQLL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144086 for 1786 contacts (-80.7/contact) +
2D Compatibility (PS) -23499 + (NN) -7302 + (LL) 1720
1D Compatibility (HY) -22000 + (ID) 4150
Total energy: -199317.0 ( -111.60 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1FDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDR-query.scw
PDB file :
Tito_Scwrl_1FDR.pdb
: