Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPE----VAVFRDSIQSATRGITR
4EQY Chain:A ((23-283))
-SRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVIAAGNKAEPHGINVEGLRRRGFSPDAISALRSAYRILYKNSLSLEEAKVQLSELAQAGGDGDAAVKALVDFVESSQRGIIR
General information:
TITO was launched using:
RESULT:
Template:
4EQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190181 for 2248 contacts (-84.6/contact) +
2D Compatibility (PS) -28304 + (NN) -15751 + (LL) 208
1D Compatibility (HY) -21200 + (ID) 6800
Total energy: -262028.0 ( -116.56 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_4EQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EQY-query.scw
PDB file :
Tito_Scwrl_4EQY.pdb
: