Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMG------MKVGGKRRLFVPSHLAYGERQVGAH-----IKPHSNLLFEIELLEVLTRDD
1Y0O Chain:A ((14-126))
----LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI-------
General information:
TITO was launched using:
RESULT:
Template:
1Y0O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49092 for 737 contacts (-66.6/contact) +
2D Compatibility (PS) -10581 + (NN) 1683 + (LL) 624
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -70566.0 ( -95.75 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0O-query.scw
PDB file :
Tito_Scwrl_1Y0O.pdb
: