Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
1I40 Chain:A ((1-171))
-SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEI---VASFER
General information:
TITO was launched using:
RESULT:
Template:
1I40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100723 for 1356 contacts (-74.3/contact) +
2D Compatibility (PS) -19065 + (NN) -11823 + (LL) 468
1D Compatibility (HY) -20000 + (ID) 6100
Total energy: -157243.0 ( -115.96 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1I40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I40-query.scw
PDB file :
Tito_Scwrl_1I40.pdb
: