Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEFHDDDSQFEEKSKSQIKRELHALQDLGERLTTLQPQLLERLPLTDPLRKALLEAPKHKAHIARKRHIQYIGKLMRDQDVDAIVALIDQVDSSTRQYNERFHALERWRDQLIAGGDAALDAFVGEFPECDRQHLRGLVRHAQHEAAHNKPPAAARKVFKYIRELDETKRGLR
1OTR Chain:A ((11-37))
----------------------------------------------------------------------------------------------------------------------SKLSILMDMFPAISKSKLQVHLLENNN-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13161 for 126 contacts (-104.5/contact) +
2D Compatibility (PS) -2890 + (NN) -2588 + (LL) 11400
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -9839.0 ( -78.09 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1OTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OTR-query.scw
PDB file :
Tito_Scwrl_1OTR.pdb
: