Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLLKSLAAVSSITMLSRVLGFVRDTILARIFGAGLATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKNQQGEEATRTFIAYVSGLLTLVLALVTALGILAAPWVIWVTAPGFADTPEKFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVAMIGFALFLTPYFDPPVMVLGWAVLAGGLLQLLYQLPHLRKIG----MLVLPRLNLRDSGVWRVMKLMLPAILGVSVSQISLIINTIFASFLAAGSVSWMYYADRLMELPSGVLGVALGTILLPMLAKTYSNKDRHEYSRLLDWGLRLCFLLVLPCSLALAILAEPLTVSLFQYGKFTT----VDAAMTQRALV-AYSVGLLGIILVKVLAPGFYAQQNIRTPVKIALFTLVSTQLMNLAFIGPLQHAGLALSIGLAACLNAGLLYWQLRKQRLYLPQPGWAKFLVKLVVAVLAMSAVLLATMHWLPAWEQGAMLERFLRLGLLVVAGLLAYFGMLALLGFRLRDFSRRAVL |
| 4RNZ Chain:A ((1-369)) | ----------------MERLVWDKLTLLGFLEKNHIPQKLYY----------------NLSSQDKELSAEIQSN------VTYYTLRDANNTLIQALIP----ISQDLQIHIYKKG----EDYFLDFIPIIFTRKEKTLLLSLQT---------------------------------SPYQDIIKATND-PLLANQLMNAYKKSVPFKRLVKNDKIAIVYTRDYRVGQAFG-----QPTIKMAMVSSRSNQYYLFSHS-------NGHYYDSKAQEVAG--------------------------------------FLLETPVKYT-------RISSPFSYGRFHRPHYGVDYAAKHGSLIHSASDGRVGFMGVKAGYGKVVEIHLNELRLVYAHMSAFANGLKKGSFVKKGQIIGRVGSTG-------PHLHFGVYKNSRPINPLGYIR------------------TAKSKLHGKQREVFLEKAQRSKQKLEELLKTHSFEKNSFYLLEGFLEHHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RNZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -317632 for 2668 contacts (-119.1/contact) +
2D Compatibility (PS) -36557 + (NN) 3827 + (LL) 15708
1D Compatibility (HY) -2400 + (ID) 3400
Total energy: -340454.0 ( -127.61 by residue)
QMean score : 0.068
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