Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR
1L4U Chain:A ((6-166))
----VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL------
General information:
TITO was launched using:
RESULT:
Template:
1L4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85159 for 1268 contacts (-67.2/contact) +
2D Compatibility (PS) -17694 + (NN) -6965 + (LL) 756
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: -122762.0 ( -96.82 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1L4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4U-query.scw
PDB file :
Tito_Scwrl_1L4U.pdb
: