Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFTPANRAYPYTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTN-VRIMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEF-RAPTFVYQVSGEYAMHMGAIQNGWL-AESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR |
| 1PV8 Chain:A ((24-328)) | ------------------------------TTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVP--------------EESPAIEAIHLLRKTFPNLLVACDVCLC---------------AFRAEESRQRLAEVALAYAKAGCQVVAPSD--DGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAA---------------LPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185832 for 2161 contacts (-86.0/contact) +
2D Compatibility (PS) -28851 + (NN) -14555 + (LL) 3240
1D Compatibility (HY) -20400 + (ID) 6000
Total energy: -252398.0 ( -116.80 by residue)
QMean score : 0.736
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