Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYSSWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSNGVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGY-GCALPDNPGVYTKVCNFVGWIQDTIAAN
2QXI Chain:A ((1-223))
-----------------------IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLG--DRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH
General information:
TITO was launched using:
RESULT:
Template:
2QXI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151464 for 1907 contacts (-79.4/contact) +
2D Compatibility (PS) -24306 + (NN) -9827 + (LL) 2496
1D Compatibility (HY) -18000 + (ID) 5050
Total energy: -206151.0 ( -108.10 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2QXI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QXI-query.scw
PDB file :
Tito_Scwrl_2QXI.pdb
: