Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNTHASVKNLSLWYGSKQALFDINLDICKKKVTAFIGPSGCGKSTFLRCFNRMNDYVPGCKVAGKLDIDGLGDIYSR-----------NVDVVLLRAKVGMVFQKPNPFP-KSIYDNVAYGPKLHGMVKNKQKLDEIVENSLTKVGLWEELKDRLQDSALDLSGGQQQRLCISRAIAVKPTILLMDEPCSALDPMATNAIENLIQELK-LRFTIIMVTHSMKQAKKLSDSIIFFCNGKIVESGSVQEIFENARSPLTKEYILDH
1B0U Chain:A ((5-254))
---NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQ-NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL-SKHDARERALKYLAKVGIDERAQG---KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGS
General information:
TITO was launched using:
RESULT:
Template:
1B0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142379 for 1942 contacts (-73.3/contact) +
2D Compatibility (PS) -25706 + (NN) -12118 + (LL) 336
1D Compatibility (HY) -12800 + (ID) 4200
Total energy: -196867.0 ( -101.37 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1B0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B0U-query.scw
PDB file :
Tito_Scwrl_1B0U.pdb
: