Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMP---------DLFFPEKILIGENSIIGYHTTILTH----E--------------YL------LSEYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
1MR7 Chain:A ((27-167))
------------------------------------------------------LENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR---
General information:
TITO was launched using:
RESULT:
Template:
1MR7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86889 for 761 contacts (-114.2/contact) +
2D Compatibility (PS) -11734 + (NN) -946 + (LL) 4432
1D Compatibility (HY) -3200 + (ID) 1750
Total energy: -100087.0 ( -131.52 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1MR7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MR7-query.scw
PDB file :
Tito_Scwrl_1MR7.pdb
: