Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSEKNAYAKSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSQTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNE----PAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVKEGDILLGLAS-SG---IHSNGYSLVRRVFADYTGDEVLPELEGKQLKDVLLEPTRIYVKAALPLIKEELVNGIAHITGGGFIENVPRMFAD-DLAAEIDEDKVPVLPIFKALEKYGDIKHEEMFEIFNMGVGLMLAVSPENVNRVKELL---DEPVYEIGRIIKKADASVVIK |
3VIU Chain:A ((39-344)) | -SEHCAYKNSR-------PLLKALPK-----EGEAVLQGPGENAGVVRVGE----GWAVAFKIESHN-----HPSAVEPFQGAATGVGGILRDIMSMGARPIALLDSLRFGPPEEARSRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRE--NPLVNAMCLGLLREE-HLKRSRASLGRPIYYAGAKTGRDGI----------------------------VGDPFL--GKLLMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVELHLDLVPTREE--------GMTPEELLLSE-SQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIPERVFRVLFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VIU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163853 for 2223 contacts (-73.7/contact) +
2D Compatibility (PS) -28147 + (NN) -1382 + (LL) 4076
1D Compatibility (HY) -11200 + (ID) 2700
Total energy: -203206.0 ( -91.41 by residue)
QMean score : 0.365
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