Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKLMDKYGITEDSSIDLIKASIASFWKNVVYMFPITLILFFLMNISNSKYLQEWFYFVSILIVFVVMYYFTNRQYIKSYSTTFKGSKNLRIELVEIIKRLPLSYFSTHDLTDLSQTVMADVSKIEQALSHAICAYYGWIGYFVFLSLSLLIGSLQLGLCIIVPVITALLILYLSKNIQYRINRKYYKKLRENSQAFQDSFEMQQDIKSYNMQHTVRKDVQDKLKDSEKIQIKTELFTTIPSSLLSILPQFSIALVIIFGFQLYLTGQIQLIFYIGYIICATKVASGFTGMLDSLLMIINFQSSFKQVTAIRKTPLQEGVNADIQTFNVEFRDVSFAYEKGRNVVSNLSFNANQGEVTAIVGPSGCGKSTILKLLSRLYDYNAGQILIGGKDISEISTNSLFENISTVFQDVELFDDTIFENIKCGNPK-ATIEEVLEAAKIANVDEIADKFVDKYDTKIGENGSKLSGGERQRISIARAILKDAPIILLDEISASLDIENEIKIQAGLDKLIKNKTVIIVSHRMKSIENANKIIVIENGKVENFGTHSYLLENSTRYRKLVECSQLASEYEY |
1MV5 Chain:A ((2-238)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLTVG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123136 for 1825 contacts (-67.5/contact) +
2D Compatibility (PS) -25776 + (NN) -7753 + (LL) 29624
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -149541.0 ( -81.94 by residue)
QMean score : 0.500
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