Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGA-QGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGG--DDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRER-KRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI
3O38 Chain:A ((19-265))
---LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARH----------------DEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR--
General information:
TITO was launched using:
RESULT:
Template:
3O38.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125127 for 1977 contacts (-63.3/contact) +
2D Compatibility (PS) -24559 + (NN) -6198 + (LL) 2388
1D Compatibility (HY) -14400 + (ID) 4550
Total energy: -172446.0 ( -87.23 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3O38.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O38-query.scw
PDB file :
Tito_Scwrl_3O38.pdb
: