Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMGLMNEEPKTPLLFISPGPGNPNSSGNLLKIIAMAKK---KFPILGVCLGLQALAQSYGAKIIRSKEIVHGKATTIALKKH---AVFKGL-GESMVVGRYHSLMA-SGLPKNLEVIAE--HDNIPMAIVNEEDKILAYQFHPESIMTLQGRALLEQSVGFLRELS
1QDL Chain:B ((1-195))
MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRND--EISIKGIERIDPD--RLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIA-KEFKATRYHSLVVD-EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV----
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139793 for 1616 contacts (-86.5/contact) +
2D Compatibility (PS) -20128 + (NN) -8872 + (LL) 192
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -183301.0 ( -113.43 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: