Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYI--FDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
2VSH Chain:A ((2-234))
MIYAGILAG-----------PKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE-----
General information:
TITO was launched using:
RESULT:
Template:
2VSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124130 for 1767 contacts (-70.2/contact) +
2D Compatibility (PS) -23757 + (NN) -8031 + (LL) 448
1D Compatibility (HY) -26400 + (ID) 5800
Total energy: -187670.0 ( -106.21 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2VSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VSH-query.scw
PDB file :
Tito_Scwrl_2VSH.pdb
: