Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSQKVILTNMCLIEDNKGRIVMQIRDPKRYSWSGAALPGGHIEEGESLYDALVREVHEETGLTISNPKLVGMKHWYTDEG----IRYLVFLYKTYDFSGELQ-SSDEGDVVWIERSQLDKIELAYDMLNLLRVFDED-DISEMFYSKRLEDGFIRKFY
3FK9 Chain:A ((1-140))
------LQRVTNCIVVD-HDQVLLLQKPRR----GWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHSDRLLYGTFHYTPDFELLSYRL
General information:
TITO was launched using:
RESULT:
Template:
3FK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82613 for 972 contacts (-85.0/contact) +
2D Compatibility (PS) -14099 + (NN) -3112 + (LL) 676
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -106198.0 ( -109.26 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_3FK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FK9-query.scw
PDB file :
Tito_Scwrl_3FK9.pdb
: