Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKAIDISHAFE---KPLYNGVNLRIKPKESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILA---K---QEINHSLLEQLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPQIIIADEPTGNLDTTSANQVISMLQNYITENEGALVLATHDEHLAF-TCSQVYRLEKESLIKEK
1OXX Chain:K ((3-222))
RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLI-VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG
General information:
TITO was launched using:
RESULT:
Template:
1OXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119423 for 1710 contacts (-69.8/contact) +
2D Compatibility (PS) -22072 + (NN) -2187 + (LL) 220
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -157612.0 ( -92.17 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1OXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXX-query.scw
PDB file :
Tito_Scwrl_1OXX.pdb
: