Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MELHAITDDSKPVEELARIIITIQNEVDFIHI----RERSKSAADILKLLD---LIFEGGIDKRKLVMN-GRVDIALFSTIHRVQLPSGSFSPKQIRARFPH-LHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSS----------AEPLEAARRYSRKLKEMRYEKAL-----------------------------------------------------------
4QCC Chain:A ((5-274))TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVT--------PNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAF---------GPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREAQKQKEQRQDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEA


General information:
TITO was launched using:
RESULT:

Template: 4QCC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1009 -163289 -161.83 -868.56
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -161.83
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.553

(partial model without unconserved sides chains):
PDB file : Tito_4QCC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4QCC-query.scw
PDB file : Tito_Scwrl_4QCC.pdb: