Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWL---YSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
1FMC Chain:A ((9-252))
-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP----FDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQ--
General information:
TITO was launched using:
RESULT:
Template:
1FMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169940 for 2100 contacts (-80.9/contact) +
2D Compatibility (PS) -26072 + (NN) -10340 + (LL) 732
1D Compatibility (HY) -15600 + (ID) 4600
Total energy: -225820.0 ( -107.53 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1FMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FMC-query.scw
PDB file :
Tito_Scwrl_1FMC.pdb
: