Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIFDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAV--RPFITHRIIEENIDMALE-FGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
3Q80 Chain:A ((7-230))
EVVAIVPAAGSGERLAVG-VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILG-----HRAMIVAGGSNRTDTVNLALTVLS--------EPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSL----EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR-----
General information:
TITO was launched using:
RESULT:
Template:
3Q80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98387 for 1724 contacts (-57.1/contact) +
2D Compatibility (PS) -22857 + (NN) -6742 + (LL) 1100
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -140586.0 ( -81.55 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_3Q80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q80-query.scw
PDB file :
Tito_Scwrl_3Q80.pdb
: