Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLATICYIDN-GKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGHDWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK
1VCD Chain:A ((2-123))
--ELGAGGVVFNAKREVLLLRD-------RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKG-VEREVHWFLMRGEG-APRL--EEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40309 for 922 contacts (-43.7/contact) +
2D Compatibility (PS) -13192 + (NN) -2732 + (LL) 1820
1D Compatibility (HY) -1600 + (ID) 1250
Total energy: -57263.0 ( -62.11 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1VCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCD-query.scw
PDB file :
Tito_Scwrl_1VCD.pdb
: