Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPNGFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLSNQPYEIKRGDRIAQILIAPVFR-VIWDDAERLCTEETERSAGGFGSSGR
3F4F Chain:A ((29-163))
----------LKIQLR--SASATVPTKGSATAAGYDIYASQD--ITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTG--AGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSL--EESARGAGGFG----
General information:
TITO was launched using:
RESULT:
Template:
3F4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86910 for 876 contacts (-99.2/contact) +
2D Compatibility (PS) -14484 + (NN) -6259 + (LL) 592
1D Compatibility (HY) -7200 + (ID) 2550
Total energy: -116811.0 ( -133.35 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_3F4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4F-query.scw
PDB file :
Tito_Scwrl_3F4F.pdb
: