Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDITSVSDQNFKSEVADYKGFVLVDFWAEWCRPCKNLMPRVEQLAKDKKGKIKICKFNIDGGAEVLSKYGIQSIPTLIIFQDGKEIARKIGTI--NDLSSWVDDEIS
1DBY Chain:A ((4-106))
-----GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN
General information:
TITO was launched using:
RESULT:
Template:
1DBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76466 for 750 contacts (-102.0/contact) +
2D Compatibility (PS) -10603 + (NN) -3619 + (LL) 232
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -102856.0 ( -137.14 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1DBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBY-query.scw
PDB file :
Tito_Scwrl_1DBY.pdb
: