Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDEKLGGKFETVKRDGFLIEKGPDSFLAR--KPAGVGLVKDLGLEDKLIANATGRSYIYHQKALHPIPEGSVMGIPTDKEALLASTLVSEIGKARALQEP--TMERNNQERDQALGDFFEARFGK-ELVKTIIEPLLSGIYAGDIYKMSLRATFPQFEQTVKKYGNLMDGLKESSMQTTGTKATIGAFRTLEGGLDALPKAIAAALPKENL--HTAKQATEIVKKNNAYEISFADGDKMEADGVIIAATHDALIHLLAET-TT----EPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACTWVQKKWPHMVPKNKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEIMDLHAAPLFYEVSRMKSAMPQYLVNHQDRLKQLKKNIKTDYPGVFFAGMSYE-GVG--IPDCIAGAQTAAKELVDYLEEV |
| 3NRN Chain:A ((1-409)) | -MRAVVVGAGLGGLLAGAFLARN--GHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSNP-KGKILWEGKIFHYRES--------W-K-----FLS--------KLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRA------AL----------------RWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKK--VYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRI---G-NTIVFTPG--LMINGFNEPSALDKSLAREGYTLIMAHMALKN------GNVKKAIEKGWEELLEIFPEG-EPLLAQVY-------------H--------IEWP-LNEVLVVGDGYRPPGGIEVDGIALGVMKALEKLNLGSFS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193493 for 3183 contacts (-60.8/contact) +
2D Compatibility (PS) -39987 + (NN) -10279 + (LL) 5640
1D Compatibility (HY) -15600 + (ID) 2650
Total energy: -256369.0 ( -80.54 by residue)
QMean score : 0.458
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