Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-LRRLDRFNA-------PDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRK---IYRVCLGMEIGEKTAIA--YKVMPDLFF--PEKILIGENSIIGYHTTILTHEYLLSEY-------RVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT-------------
1KRR Chain:A ((2-201))
NMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRDKHYYFKDYKVES
General information:
TITO was launched using:
RESULT:
Template:
1KRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134009 for 1208 contacts (-110.9/contact) +
2D Compatibility (PS) -17627 + (NN) -1229 + (LL) 0
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -158115.0 ( -130.89 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1KRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KRR-query.scw
PDB file :
Tito_Scwrl_1KRR.pdb
: