Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-HALLK-SKHPGDALFAFLRSMVLQWGATDRGLVEALAGVG---IEIS---SAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQS-------------YNAELAAKVTDVALDGLRANRK
2GFN Chain:A ((4-199))
--------IVDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPL-DERRLAMTRVFLFFYAEG----TARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPVVMKAISAEDAAARCVDAAVRR------
General information:
TITO was launched using:
RESULT:
Template:
2GFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100766 for 1259 contacts (-80.0/contact) +
2D Compatibility (PS) -18677 + (NN) -12408 + (LL) 1724
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -135777.0 ( -107.85 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2GFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFN-query.scw
PDB file :
Tito_Scwrl_2GFN.pdb
: