Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDG---QPIRNIVEPAVDASIALLGPRS
3BJB Chain:A ((17-203))
---------SEEQRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRM----------GESPQDAVYNVLVRATRGLLRRPALSTAMIQSTSTANVASVPDAGKVDRAFRQIMLDA--AG--HP-TEE--DLTALRLLVQLWFGVIQSCLNGRVSIPDAESDIRRACDLLLVNLS---
General information:
TITO was launched using:
RESULT:
Template:
3BJB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93892 for 1283 contacts (-73.2/contact) +
2D Compatibility (PS) -17944 + (NN) -1820 + (LL) 1508
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -120048.0 ( -93.57 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3BJB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJB-query.scw
PDB file :
Tito_Scwrl_3BJB.pdb
: