Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSRLIGALTVVAIIVTACGSQPKSQPAVAPTGDAAAATQVPAGQTVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA-SHP-EVTFVGVAGLDQ-VPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQ--DELTRRVTALTSR
3KCM Chain:A ((4-141))
----------------------------------------------EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGF-TLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE---
General information:
TITO was launched using:
RESULT:
Template:
3KCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82050 for 944 contacts (-86.9/contact) +
2D Compatibility (PS) -14126 + (NN) -5633 + (LL) 3356
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -107853.0 ( -114.25 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3KCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KCM-query.scw
PDB file :
Tito_Scwrl_3KCM.pdb
: