Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGHDWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTW-QGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK
1VK6 Chain:A ((141-263))
---PCIIVAIRRDDSILLAQHT----RHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFP----QSLMTAFMAEYDSGDIVI-DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEY---------------------
General information:
TITO was launched using:
RESULT:
Template:
1VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44669 for 900 contacts (-49.6/contact) +
2D Compatibility (PS) -13359 + (NN) -5627 + (LL) 2000
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -64855.0 ( -72.06 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK6-query.scw
PDB file :
Tito_Scwrl_1VK6.pdb
: