Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDYDFKAKLAAERERVEDLFEYEGCKVGRGTYGHVYKARRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLNEDDPEEKGDKNQQQQQNQHQQPTAPPQQAAAPPQAPPPQQNSTQTNGTAGGAGAGVGGTGAGLQHSQDSSLNQVPPNKKPRLGPSGANSGGPVMPSDYQHSSSRLNYQSSVQGSSQSQSTLGYSSSSQQSSQYHPSHQAHRY |
3NIZ Chain:A ((16-307)) | ------------FQGLMEKYQKL-EKVGEGTYGVVYKAKDSQ---GRIVALKRIR--GIPSTAIREISLLKELHHPNIVSLIDVIHS--ERCLTLVFEFMEKDLKKVLDENK--------TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSD----GALKLADFGLARAFGIPVR------HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD---------DQLPKIFSILGTPNPREWPQVQELPLWKQRT--F--QVFEKKPWSSIIP----GFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDL-------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NIZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -191567 for 2238 contacts (-85.6/contact) +
2D Compatibility (PS) -29918 + (NN) -11865 + (LL) 4672
1D Compatibility (HY) -28800 + (ID) 5600
Total energy: -263078.0 ( -117.55 by residue)
QMean score : 0.521
|
|
|