Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQS------EANKGKIGLFAGIDGCRFKRQVVPGDQLLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDLPK
3DP2 Chain:A ((14-151))
---IEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAEL---------
General information:
TITO was launched using:
RESULT:
Template:
3DP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77704 for 966 contacts (-80.4/contact) +
2D Compatibility (PS) -13975 + (NN) -2542 + (LL) 964
1D Compatibility (HY) -13200 + (ID) 3100
Total energy: -109557.0 ( -113.41 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3DP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP2-query.scw
PDB file :
Tito_Scwrl_3DP2.pdb
: