Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-H-AL-LKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVGIEIS-SAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQS---------YNAELAAKVTDVALDGLRANRK
3COL Chain:A ((10-195))
-------------NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDY-SLANPDSLTIIQQIKALNGQ------DADPNNIVANLLTAAIDAKVIKQ-LPVSLHMGVVFSTIHTHTTNISKGRYAQDQYTFGDIFQMIWDAMKQ---
General information:
TITO was launched using:
RESULT:
Template:
3COL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108277 for 1183 contacts (-91.5/contact) +
2D Compatibility (PS) -17983 + (NN) -11454 + (LL) 1568
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -144196.0 ( -121.89 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3COL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3COL-query.scw
PDB file :
Tito_Scwrl_3COL.pdb
: