Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWL-----YSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTP-AELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
3AWD Chain:A ((11-259))
-LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEV--KAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGFTV--
General information:
TITO was launched using:
RESULT:
Template:
3AWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173971 for 2148 contacts (-81.0/contact) +
2D Compatibility (PS) -26538 + (NN) -12816 + (LL) 380
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -229295.0 ( -106.75 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3AWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AWD-query.scw
PDB file :
Tito_Scwrl_3AWD.pdb
: