Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGLVSSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTPPPPDEHLDEDKHFVVALYDYTAMNDRDLQMLKGEKLQVLKGTGDWWLARSLVTGREGYVPSNFVARVESLEMERWFFRSQGRKEAERQLLAPINKAGSFLIRESETNKGAFSLSVKDVTTQGELIKHYKIRCLDEGGYYISPRITFPSLQALVQHYSKKGDGLCQRLTLPCVRPAPQNPWAQDEWEIPRQSLRLVRKLGSGQFGEVWMGYYKN-NMKVAIKTLKEGTM--SPEAFLGEANVMKALQHERLVRLYAVVT-KEPIYIVTEYMARGCLLDFLKTDE-----GSRLSLPRLIDMSAQIAEGMAYIERMNSIHRDLRAANILVS---EALCCKIADFGLARII-DSEYT-AQEGAKFPIKWTAPEAIHFGVFTIKADVWSFGVLLMEVVTYGRVPYPGMSNPEVIRNLERGYRMPRPDTCPPELYRGVIAECWRSRPEERPTFEFLQSVLEDFYTATERQYELQP |
| 3L9P Chain:A ((61-345)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-RIMTQCWQHQPEDRPNFAIILERIEYCTQ---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L9P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185475 for 2146 contacts (-86.4/contact) +
2D Compatibility (PS) -27723 + (NN) -7190 + (LL) 13740
1D Compatibility (HY) -25600 + (ID) 5200
Total energy: -237448.0 ( -110.65 by residue)
QMean score : 0.490
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