Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMD--SESRASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK
1OCX Chain:A ((1-182))
-STEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKKL-----
General information:
TITO was launched using:
RESULT:
Template:
1OCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145543 for 1425 contacts (-102.1/contact) +
2D Compatibility (PS) -20028 + (NN) -10183 + (LL) 880
1D Compatibility (HY) -23600 + (ID) 5850
Total energy: -204324.0 ( -143.39 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_1OCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OCX-query.scw
PDB file :
Tito_Scwrl_1OCX.pdb
: