Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDEKLGGKFETVKRDGFLIEKGPDSFLARK--PAGVGLVKDLGLEDKLIANATGRS-YIYHQKALHPIPEGSVMGIPTDKEALLASTLVSEIGKARALQEPTMERNNQERDQALGDFFEARFGKELVKTIIEPLLSGIYAGDIYKMSLRATFPQFEQTVKKYGNLMDGLKESSMQTTGTKATIGAFRTLEGGLDALPKAIAAALPKENL--HTAKQATEIVKKNNAY-EISFADGDKMEADGVIIAATHDALIHLLAETTT--------EPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACTWVQKKWPHMVPKNKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEIMDLHAAPLFYEVSRMKSAMPQYLVNHQDRLKQLKKNIKTDYPGVFFAGMSYEGV---GIPDCIAGAQTAAKELVDYLEEV |
| 3KA7 Chain:A ((1-422)) | -MKTVVIGAGLGGLLSAARLSKA--GHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGF--KDIS--FNDFP--SLLSYKDRMKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM----------Y------------RFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGH----TGVLLTPYT-RRINGVNEVTQADPELAPPGKHLTMCHQYVAP-EN-VKNL-ESEIEMGLEDLKEIFPGKR-YEVLLIQSYHDEWPVNRAA-SGT---DPGNETP-FSGLYVVGDGAKGKGGIEVEGVALGVMSVMEK-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KA7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167050 for 3634 contacts (-46.0/contact) +
2D Compatibility (PS) -42949 + (NN) -7546 + (LL) 2708
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -229637.0 ( -63.19 by residue)
QMean score : 0.423
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