Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGY---YDGLIFHRVIPEFMIQGGDPDG-RGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
3PMP Chain:A ((10-163))
----------------SINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTS---------------------------WLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTV
General information:
TITO was launched using:
RESULT:
Template:
3PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52065 for 1168 contacts (-44.6/contact) +
2D Compatibility (PS) -15708 + (NN) -6016 + (LL) 2824
1D Compatibility (HY) -7200 + (ID) 3450
Total energy: -81615.0 ( -69.88 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PMP-query.scw
PDB file :
Tito_Scwrl_3PMP.pdb
: